Note: This unit version is currently under review and is subject to change!

COMP5424: Information Technology in Biomedicine (2019 - Semester 1)

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Unit: COMP5424: Information Technology in Biomedicine (6 CP)
Mode: Normal-Day
On Offer: Yes
Level: Postgraduate
Faculty/School: School of Computer Science
Unit Coordinator/s: Dr Cai, Tom
Session options: Semester 1
Versions for this Unit:
Campus: Camperdown/Darlington
Pre-Requisites: None.
Brief Handbook Description: Information technology (IT) has significantly contributed to the research and practice of medicine, biology and health care. The IT field is growing enormously in scope with biomedicine taking a lead role in utilising the evolving applications to its best advantage. The goal of this unit of study is to provide students with the necessary knowledge to understand the information technology in biomedicine. The major emphasis will be on the principles associated with biomedical data processing, analysis, visualisation, registration, modelling, retrieval, and management. A broad range of practical integrated medical image computing applications will be also elaborated.
Assumed Knowledge: None.
Lecturer/s: Dr Cai, Tom
Timetable: COMP5424 Timetable
Time Commitment:
# Activity Name Hours per Week Sessions per Week Weeks per Semester
1 Lecture 2.00 1 13
2 Tutorial 1.00 1 13
3 Independent Study 6.00 1 13
T&L Activities: Tutorial: Students are expected to attend all scheduled tutorials.

Independent Study: Students are expected to undertake prescribed reading and practical work besides understanding lecture contents

Learning outcomes are the key abilities and knowledge that will be assessed in this unit. They are listed according to the course goal supported by each. See Assessment Tab for details how each outcome is assessed.

(4) Design (Level 4)
1. Ability to apply biomedical data processing and analysis techniques to ITB real cases and applications.
2. Apply learned core ITB knowledge to solve problems and provide optimal ITB solutions.
(2) Engineering/ IT Specialisation (Level 4)
3. Understanding key sampling and acquisition techniques for biomedical data.
4. Understand various registration and fusion approaches for biomedical data.
5. Understand the-state-of-the-art of biomedical data visualization applications.
(1) Maths/ Science Methods and Tools (Level 4)
6. Obtain research and development skills in advanced biomedical data modelling.
Assessment Methods:
# Name Group Weight Due Week Outcomes
1 Lab Activities No 12.00 Week 13 1, 2, 3, 4, 5, 6,
2 Quiz No 15.00 Week 9 1, 2, 3, 4, 5, 6,
3 Assignment No 13.00 Week 12 1, 2, 3, 4, 5, 6,
4 Final Exam No 60.00 Exam Period 1, 2, 3, 4, 5, 6,
Assessment Description: Lab Activities: Individual lab activities

Quiz: Quiz (Closed-book)

Assignment: Individual assignment

Final Exam: Final exam (Closed-book)
Grading:
Grade Type Description
Standards Based Assessment Final grades in this unit are awarded at levels of HD for High Distinction, DI (previously D) for Distinction, CR for Credit, PS (previously P) for Pass and FA (previously F) for Fail as defined by University of Sydney Assessment Policy. Details of the Assessment Policy are available on the Policies website at http://sydney.edu.au/policies . Standards for grades in individual assessment tasks and the summative method for obtaining a final mark in the unit will be set out in a marking guide supplied by the unit coordinator.
Minimum Pass Requirement It is a policy of the School of Computer Science that in order to pass this unit, a student must achieve at least 40% in the written examination. For subjects without a final exam, the 40% minimum requirement applies to the corresponding major assessment component specified by the lecturer. A student must also achieve an overall final mark of 50 or more. Any student not meeting these requirements may be given a maximum final mark of no more than 45 regardless of their average.
Policies & Procedures: IMPORTANT: School policy relating to Academic Dishonesty and Plagiarism.

In assessing a piece of submitted work, the School of Computer Science may reproduce it entirely, may provide a copy to another member of faculty, and/or to an external plagiarism checking service or in-house computer program and may also maintain a copy of the assignment for future checking purposes and/or allow an external service to do so.

Other policies

See the policies page of the faculty website at http://sydney.edu.au/engineering/student-policies/ for information regarding university policies and local provisions and procedures within the Faculty of Engineering and Information Technologies.
Prescribed Text/s: Note: Students are expected to have a personal copy of all books listed.
  • Biomedical Information Technology

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Course Relations

The following is a list of courses which have added this Unit to their structure.

Course Year(s) Offered
Biomedical - Chemical and Biomolecular Major 2013, 2014, 2015
Biomedical - Electrical Major 2013, 2014
Biomedical - Information Technology Major 2013, 2014, 2015
Biomedical - Mechanical Major 2013, 2014, 2015
Biomedical - Mechatronics Major 2013, 2014, 2015
Biomedical - Electrical Major 2015
Bachelor of Advanced Computing/Bachelor of Commerce 2018, 2019, 2020
Bachelor of Advanced Computing/Bachelor of Science 2018, 2019, 2020
Bachelor of Advanced Computing/Bachelor of Science (Health) 2018, 2019, 2020
Bachelor of Advanced Computing/Bachelor of Science (Medical Science) 2018, 2019, 2020
Bachelor of Advanced Computing (Computational Data Science) 2018, 2019, 2020
Bachelor of Advanced Computing (Computer Science Major) 2018, 2019, 2020
Bachelor of Advanced Computing (Information Systems Major) 2018, 2019, 2020
Bachelor of Advanced Computing (Software Development) 2018, 2019, 2020
Bachelor of Computer Science and Technology (Honours) 2015, 2016, 2017
Bachelor of Computer Science and Technology (Honours) 2014 2013, 2014
Biomedical Engineering / Law 2013, 2014
Biomedical Engineering / Arts 2013, 2014
Biomedical Engineering / Commerce 2013, 2014
Biomedical Engineering / Medical Science 2013, 2014
Biomedical Engineering / Project Management 2013, 2014
Biomedical Engineering / Science 2013, 2014
Biomedical Mid-Year 2016, 2017, 2018, 2019, 2020
Biomedical 2016, 2017, 2018, 2019, 2020
Biomedical / Arts 2015, 2016, 2017, 2018
Biomedical / Commerce 2015
Biomedical / Medical Science 2015
Biomedical / Music Studies 2016, 2017
Biomedical / Project Management 2015, 2016
Biomedical /Science 2015, 2016, 2017, 2018
Biomedical/Science (Health) 2018
Biomedical / Law 2015, 2016, 2017, 2018
Software Mid-Year 2016, 2017, 2018, 2019, 2020
Software/ Project Management 2019, 2020
Software 2015, 2016, 2017, 2018, 2019, 2020
Software / Arts 2016, 2017, 2018, 2019, 2020
Software / Commerce 2016, 2017, 2018, 2019, 2020
Software / Medical Science 2016, 2017
Software / Music Studies 2016, 2017
Software / Project Management 2016, 2017, 2018
Software / Science 2016, 2017, 2018, 2019, 2020
Software/Science (Health) 2018, 2019, 2020
Software / Law 2016, 2017, 2018, 2019, 2020
Software Engineering (till 2014) 2010, 2011, 2012, 2013, 2014
Software Engineering / Arts 2011, 2012, 2013, 2014
Software Engineering / Commerce 2010, 2011, 2012, 2013, 2014
Software Engineering / Medical Science 2011, 2012, 2013, 2014
Software Engineering / Project Management 2012, 2013, 2014
Software Engineering / Science 2011, 2012, 2013, 2014
Bachelor of Information Technology 2015, 2016, 2017
Bachelor of Information Technology/Bachelor of Arts 2015, 2016, 2017
Bachelor of Information Technology/Bachelor of Commerce 2015, 2016, 2017
Bachelor of Information Technology/Bachelor of Medical Science 2015, 2016, 2017
Bachelor of Information Technology/Bachelor of Science 2015, 2016, 2017
Bachelor of Information Technology (Computer Science) 2014 and earlier 2009, 2010, 2011, 2012, 2013, 2014
Information Technology (Computer Science)/Arts 2012, 2013, 2014
Information Technology (Computer Science) / Commerce 2012, 2013, 2014
Information Technology (Computer Science) / Medical Science 2012, 2013, 2014
Information Technology (Computer Science) / Science 2012, 2013, 2014
Information Technology (Computer Science) / Law 2012, 2013, 2014
Bachelor of Information Technology (Information Systems) 2014 and earlier 2010, 2011, 2012, 2013, 2014
Information Technology (Information Systems)/Arts 2012, 2013, 2014
Information Technology (Information Systems) / Commerce 2012, 2013, 2014
Information Technology (Information Systems) / Medical Science 2012, 2013, 2014
Information Technology (Information Systems) / Science 2012, 2013, 2014
Information Technology (Information Systems) / Law 2012, 2013, 2014
Bachelor of Information Technology/Bachelor of Laws 2015, 2016, 2017
Graduate Certificate in Information Technology 2015, 2016, 2017, 2018, 2019, 2020
Graduate Certificate in Information Technology Management 2015, 2016, 2017, 2018, 2019, 2020
Graduate Diploma in Computing 2015, 2016, 2017, 2018, 2019, 2020
Graduate Diploma in Health Technology Innovation 2015, 2016, 2017, 2018, 2019, 2020
Graduate Diploma in Information Technology 2015, 2016, 2017, 2018, 2019, 2020
Graduate Diploma in Information Technology Management 2015, 2016, 2017, 2018, 2019, 2020
Graduate Certificate in Information Technology (till 2014) 2012, 2013, 2014
Graduate Diploma in Information Technology (till 2014) 2012, 2013, 2014
Master of Engineering 2014, 2015, 2016, 2017, 2018, 2019, 2020
Master of Health Technology Innovation 2015, 2016, 2017, 2018, 2019, 2020
Master of Information Technology 2015, 2016, 2017, 2018, 2019, 2020
Master of Information Technology Management 2015, 2016, 2017, 2018, 2019, 2020
Master of IT/Master of IT Management 2015, 2016, 2017, 2018, 2019, 2020
Master of Information Technology (till 2014) 2014
Software/Science (Medical Science Stream) 2018, 2019, 2020

Course Goals

This unit contributes to the achievement of the following course goals:

Attribute Practiced Assessed
(5) Interdisciplinary, Inclusiveness, Influence (Level 4) No 0%
(8) Professional Effectiveness and Ethical Conduct (Level 4) No 0%
(4) Design (Level 4) No 33.34%
(3) Problem Solving and Inventiveness (Level 4) No 0%
(2) Engineering/ IT Specialisation (Level 4) No 50.01%
(1) Maths/ Science Methods and Tools (Level 4) No 16.67%

These goals are selected from Engineering & IT Graduate Outcomes Table 2018 which defines overall goals for courses where this unit is primarily offered. See Engineering & IT Graduate Outcomes Table 2018 for details of the attributes and levels to be developed in the course as a whole. Percentage figures alongside each course goal provide a rough indication of their relative weighting in assessment for this unit. Note that not all goals are necessarily part of assessment. Some may be more about practice activity. See Learning outcomes for details of what is assessed in relation to each goal and Assessment for details of how the outcome is assessed. See Attributes for details of practice provided for each goal.